Glyma06g17860 - SoyBase

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Report for Sequence Feature Glyma06g17860

Feature Type:	gene_model
Chromosome:	Gm06
Start:	14224597
stop:	14233577
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g17860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G50400	AT	Annotation by Michelle Graham. TAIR10: purple acid phosphatase 27 \| chr5:20523575-20526231 REVERSE LENGTH=611	SoyBase	E_val: 0	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003993	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1378	KOG	Purple acid phosphatase	JGI		ISS
PTHR22953	Panther	ACID PHOSPHATASE RELATED	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
UniRef100_G0T440	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Purple acid phosphatases n=1 Tax=Glycine max RepID=G0T440_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KC33	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KC33_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma06g17860

Locus	Gene Symbol	Protein Name
	PAP12	Purple acid phosphatase 12 gene

Expression Patterns of Glyma06g17860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g17860

Paralog	Evidence	Comments
Glyma04g37191	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g17860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g170300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g17860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g17860

Limit To All Plant Sequences

>Glyma06g17860.1   sequence type=CDS   gene model=Glyma06g17860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGGTTTTTTGGAAATTGCTTCAATATGATTTTGCTGATGTTGTGCTTCACCAACTTGAGCATAGCTTTTGCTCAAAGTCATATGAATGGATTTGGAGAGCAGCCACTGGCCAAGATTGCCATTCACAAGACCGTTTTGGCGCTACACAGTTCTGCTTCCATTATAGCAGTCCCTTTTGTGCTAGGAACTAAGGGTGAGGATACCCAATGGGTGACTGTAGAGCTAGAGTCCCCAATACCATCTGTTGATGACTGGGTCGGAGTTTTTTCTCCAGCAAACTTCAATTCAGCAACATGTCCTGACACTGACGGCATTGGCTGGGTAGAGGAACCATACATATGCACAGCCCCAATAAAGTACAAGTATGCCAACTACTCTAACCGAAACTATGCAAAGACCGGGAAAGCTATTTTGAAGTTCCAGTTGATCAATCAACGTGCAGATTTCTCATTTGCACTATTTTCAGGTGGATTATCCGATCCTAGACTTGTGGCAATTTCGAATTCCATATCATTTGCAAATCCTAAAGCACCTGTGTATCCGCGCCTTGCTCTAGGAAAATCTTGGGATGAAATGACAGTTACATGGACAAGTGGATATGACATAAATGAAGCTGTGCCTTTTGTTGAGTGGGGACCAAAGGGAGGAAAGAAAACACGATCTCATGCTGGAACATTGACATTTAACCGAAACAGCATGTGTGGTGAACCTGCACGAACTGTTGGTTGGCGTGACCCTGGTTTTATACACACAAGTTTCTTAAAAGAACTGTGGCCAAATTTTAGGTACACTTACAAGTTGGGGCATATGCTGTCTAACGGTTCTTATGTATGGAGTAAGAAGTATTCATTCAAGGCATCCCCATATCCTGGACAGAACTCTTTGCAACGTGTTATCATATTTGGTGACATGGGAAAGGCTGAGCGTGATGGTTCAAATGAATATGCTGATTATCAACCGGGTTCTCTAAACACCACAGACCAACTCGTCAAGGATTTAGAAAATTATGACATTGTTTTCCACATAGGAGACATGCCTTATGCAAATGGATACATCTCACAATGGGACCAATTCACAGCTCAAGTGCAAGAAATTTCGTCAACAGTACCATACATGATTGCAAGTGGAAATCATGAACGTGACTGGCCAAACACAGGATCATTCTATGATACTCCAGATTCAGGTGGAGAATGTGGAGTCCCTGCAGAAACCATGTATTATTTTCCTGCTGAGAATAGAGCCAAATTCTGGTATAAAGCAGATTATGGCCTGTTTCGTTTCTGCATAGCAGATAGTGAACATGACTGGAGAGAAGGATCAGAACAATACAAATTCATTGAGCATTGTCTTGCAACAGTAGATAGAAAGCATCAACCATGGCTAATCTTTTCAGCTCATCGTCCCCTTGGCTACTCCTCTAATCTTTGGTATGGCATGGAGGGTTCATTTGAAGAGCCCATGGGAAGGGAAAGTTTGCAGAAGCTTTGGCAAAAGTACAAAGTAGACATTGGATTTTATGGTCATGTCCATAACTATGAAAGAGTATGCCCCATTTATCAGAATCAATGTGTGAATGAAGAAAAGCATCACTACTCTGGCACTGTGAATGGAACAATTCATGTGGTTGTTGGTGGAGGGGGAAGTCACCTGTCAGACTTCACACCATCACCCCCTATTTGGAGTCTTTATAGGGACGTTGACTATGGGTTTGGCAAATTGACTGCTTTCAATCATTCATATCTCTTGTTTGAGTACAAGAAAAGTAGTGATGGAGAGGTCTACGACTCCTTTACCATTTCAAGAGACTACAGAGATGTTTTGGCCTGTGTGCACGATGGTTGTGAGAAAACTACTCTAGCAACATGA

Predicted protein sequences of Glyma06g17860

Limit To All Plant Sequences

>Glyma06g17860.1   sequence type=predicted peptide   gene model=Glyma06g17860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGFFGNCFNMILLMLCFTNLSIAFAQSHMNGFGEQPLAKIAIHKTVLALHSSASIIAVPFVLGTKGEDTQWVTVELESPIPSVDDWVGVFSPANFNSATCPDTDGIGWVEEPYICTAPIKYKYANYSNRNYAKTGKAILKFQLINQRADFSFALFSGGLSDPRLVAISNSISFANPKAPVYPRLALGKSWDEMTVTWTSGYDINEAVPFVEWGPKGGKKTRSHAGTLTFNRNSMCGEPARTVGWRDPGFIHTSFLKELWPNFRYTYKLGHMLSNGSYVWSKKYSFKASPYPGQNSLQRVIIFGDMGKAERDGSNEYADYQPGSLNTTDQLVKDLENYDIVFHIGDMPYANGYISQWDQFTAQVQEISSTVPYMIASGNHERDWPNTGSFYDTPDSGGECGVPAETMYYFPAENRAKFWYKADYGLFRFCIADSEHDWREGSEQYKFIEHCLATVDRKHQPWLIFSAHRPLGYSSNLWYGMEGSFEEPMGRESLQKLWQKYKVDIGFYGHVHNYERVCPIYQNQCVNEEKHHYSGTVNGTIHVVVGGGGSHLSDFTPSPPIWSLYRDVDYGFGKLTAFNHSYLLFEYKKSSDGEVYDSFTISRDYRDVLACVHDGCEKTTLAT*

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